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July 18, 2018  |  Announcements

Manage Experiments More Efficiently with Cytobank 6.3.1

storagedetailCytobank’s latest release introduces functionality to help you better manage your account storage and more easily clone experiment features

Improved Storage Management
You can now see how much storage space you are using, and can filter by experiment size in the inbox. Understand quickly which of your experiments may be more resource-intensive, cull unused or duplicate experiments, and keep your storage usage in check.

Improvements to cloning and sharing (learn more)
Select which components from your clonedetail-2experiments to clone. Carry over sharing permissions, compensation matrices separately from gates, panels separately from sample tags, and more. You can also choose whether to give your PI full access when you clone experiments. These features are also fully-supported in the Cytobank API.

Iterate and Refine Faster 
You can now quickly cancel SPADE, viSNE, and CITRUS runs in progress to correct mistakes or refine settings.

 

June 28, 2018  |  API, Education, SPADE, viSNE, Webinars

July Webinar:
Explore Hidden Cell Populations with cytoClustR and the Cytobank API

Best Practices for Adopting Clustering Pipelines in Place ofSPADE Tree Kordasti Manual Gating

Join us Wednesday, July 18 at 9:00 AM PDT for our next free webinar. Learn how Physician Scientist, Dr. Shahram Kordasti of King’s College London and Bioinformatician Thanos Mourikis of Cancer Research UK (CRUK) collaborated to build cytoClustR, a tool you can use with Cytobank’s machine learning algorithms to identify cell subsets in order to help make discoveries in the clinic.

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Top Trends, Presentations, and Takeaways from CYTO 2018

CYTO, the International Society for the Advancement of Cytometry (ISAC)’s annual meeting wrapped up earlier this month in the exciting city of Prague, Czech Republic. As the premier meeting for showcasing the state of the art and science of cytometry, CYTO and its members revealed no small number of exciting developments in cytometry and beyond. We’re just now getting around to sharing all we saw and heard at the meeting. Some of our favorite presentations and observations include: More »

May 25, 2018  |  Education, Events, viSNE, Webinars

Webinar Recap: Advanced viSNE (t-SNE) Review

Untitled-1Nearly 500 scientists registered for our latest data analysis webinar. Cytobank Application Scientist Geoff Kraker took us on a tour of recently added features like setting the seed (for replicating results), configuring display gate labels, and more. If you missed it, not to worry. The recording is now available online.

cyobankarrow40x40View our latest webinars on the Cytobank YouTube channel

Following the demo, Geoff fielded many great live questions from the viewers. Here are some of our favorites: More »

May 3, 2018  |  Announcements

New Release 6.3.0: Do More with Exploratory Data Analysis

viSNE is a powerful tool for exploratory data analysis. Samples or cells are visible in one view or “map” based on their similarity across the n-dimensions used to generate the map. Cytobank’s latest release introduces features to facilitate data exploration and the reproducibility of your results.

Our new expanded features can help investigators use viSNE in translational or clinical research studies to both uncover new discoveries and repeat these exciting findings.

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April 30, 2018  |  Education, Events, viSNE, Webinars

May Webinar: New Developments in viSNE Presented by Geoff Kraker

If you missed the webinar, click here to view the recording on our YouTube Channel.

Join us for our free Webinar May 17, 2018 9:00 AM PDT/ 16:00 GMT

In our previous and popular webinars featuring viSNE, hundreds have logged on to watch as scientists showed us how they used viSNE to make discoveries in the clinic and build comprehensive data analysis pipelines for their high parameter data.

With recent improvements released on Cytobank, it’s a great time to gather and review viSNE best practices, to dive deeper into how you can now explore your data more efficiently with viSNE, and how you can extend viSNE’s capabilities by integrating with other analysis approaches, including basic analysis and more advanced machine learning algorithms.visne_display_gates More »

April 16, 2018  |  Conferences, Events, viSNE

AACR Bulletin: Don’t Miss our Booth, Key Presentations in Chicago

cytobankbooth3603If you’re at the Annual Meeting of the AACR (American Association for Cancer Research), come visit our team in person, get some hands-on help, and see the latest developments in how our cloud-based Machine Learning analysis platform can help accelerate more detailed discovery.
Meet us at Booth #3603
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Posters and Talks:

We’re excited to see the breadth and depth of presentations throughout the conference program that include work done on the Cytobank platform. In addition to our very own team’s presentation on rapid RNA-seq biomarker discovery, many others have used of Cytobank in their discoveries. See here for a sampling of posters and talks submitted to us by our users. More »